FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16138354
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA488560.30273223650937386No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN332850.20624779949677646No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG322360.19974775618380908No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC266430.1650911858793034No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC266340.16503541811017405No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT236230.14637800112700466No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT206490.12794985163914485No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG186520.11557560331121748No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA168630.10449021009205771No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC164010.10162746461008354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)