FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16090990
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA488390.30351768287718783No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN350830.21802884719958185No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG318460.19791199919955205No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC269440.16744774560173115No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC267280.16610537947012582No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT236620.1470512379909502No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT202710.12597733265634992No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG187900.11677342413363007No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA167410.10403958985742952No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC162350.10089497290098372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)