FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13185622
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT578380.4386444568181918No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG304890.23122913731335543No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT264150.20033184630956358No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT251120.19044987032086919No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCC241610.1832374688126203No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN223820.1697455000605963No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT206880.15689817287345262No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT200300.15190788875943811No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT198570.15059585357444646No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA180520.1369067003437532No Hit
CCCAAACCCACCCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC176290.13369866055617247No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT141160.10705600388059054No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC138930.10536476777508108No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT138120.1047504622838422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)