FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13248118
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT929330.7014807688156159No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG506670.38244677470415045No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN193920.14637550782684755No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA161930.12222868183994134No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC147790.11155546772756704No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCC137500.10378832676460159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)