EGAF00004828347 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828347
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13565778
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT	25273	0.1862996726026329	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	24622	0.18150083246239176	No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA	20008	0.1474887765375491	No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG	20003	0.14745191908639518	No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA	20002	0.1474445475961644	No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA	19752	0.1456016750384681	No Hit
CTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTT	19649	0.14484241154469726	No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG	18235	0.13441912435836706	No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG	16463	0.12135684366941579	No Hit
CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT	15696	0.1157029106624036	No Hit
CAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGG	14919	0.10997526275308353	No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG	14379	0.10599465802845956	No Hit
CTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTACCCAT	13997	0.10317874876029963	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGTCGAG	1905	35.77269	5
CCCGTAT	2345	33.341324	1
GTTACGA	1985	33.147144	4
TGTTACG	2005	33.0509	3
TTACGAC	2100	31.331938	5
GTCGAGG	2250	30.287542	6
ACGACTT	4230	30.174948	1
TTCGCGC	3330	29.497189	7
GTATCGA	2170	29.021751	4
CGTACGC	6995	28.420467	5
CCGTACG	7110	27.960783	4
TCCGTAC	7325	27.204252	3
GTACGCC	7345	27.194162	6
TACGCCA	7485	26.68552	7
TACGACT	2575	25.734777	6
TGTGTCG	2870	24.39961	3
TTCCGTA	8265	24.339579	2
CCCGTCG	7150	23.121641	1
CGCCCTT	2140	22.669453	1
TATCGAA	3090	21.749842	5