EGAF00004828348 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828348
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13565778
Sequences flagged as poor quality	0
Sequence length	100
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	111691	0.8233291153666232	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	58167	0.4287774722540793	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	27615	0.20356370272313168	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	26870	0.19807194250119675	No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC	18009	0.1327531675662096	No Hit
CGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACG	17797	0.13119041163728318	No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA	16105	0.1187178501667947	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCC	15091	0.11124315907277858	No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	14217	0.10480047661107236	No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT	14118	0.10407069907822464	No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT	14014	0.10330406409422296	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACCCGG	19095	61.23613	4
TCACCCG	19215	60.82946	3
ACCCGGC	20285	57.57275	5
CGACCGT	2130	51.208153	1
CTCACCC	23635	49.67307	2
CCAGTAG	11410	48.334	5
GCGATTT	22865	46.883095	94
CGGCCCG	24955	46.86529	8
TAGCATA	12230	45.2768	9
GTAGCAT	12765	43.784412	8
CAGTAGC	12975	42.85364	6
GCCAGTA	12965	42.57427	4
ACCGTTG	2825	39.277767	3
CCTCACC	31265	38.43555	1
GACCGTT	2890	37.744022	2
TGCCAGT	15055	36.9139	3
CCCGGCC	32555	36.28149	6
CCGGCCC	33055	35.992622	7
CGGACAC	19330	34.737137	12-13
CGGACAG	19970	33.467297	18-19