FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13713804
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT549910.4009901264448581No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT404720.29511869937764895No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT337800.2463211520304651No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG325490.23734479506926012No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT311800.22736215276228244No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT251440.1833481067689169No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC234520.17101017339900731No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC228410.1665548085709844No Hit
CACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTT217500.15859932080114314No Hit
CGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCT214470.15638986819412032No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT207740.1514824041527792No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN190310.13877258272030138No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA182260.13290258486996023No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG163300.11907709924977783No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC154770.11285708910525481No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT152720.11136224493218658No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC151600.11054554957909563No Hit
CAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTT143640.10474117903391357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)