FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11360098
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT436320.3840811936657589No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG207090.1822959625876467No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT187820.16533308075335265No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN158550.13956745795678877No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT148630.13083513892221704No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC141900.12491089425460943No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT122050.10743745344450374No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT121270.10675083964944668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)