FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12008340
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1172816497.66682155901648No Hit
NTCCGC468830.3904203245411106No Hit
GTCTGC277950.23146413242796257No Hit
GTCCGT189310.15764876743996256No Hit
GTCCTC167880.13980283702826538No Hit
TTCCGC165310.13766265778617193No Hit
GTCCCC160730.13384864186057358No Hit
GTTCGC159760.13304086992873287No Hit
GACCGC159520.13284100883219496No Hit
ATCCGC152270.1268035382076124No Hit
GTCCAC148620.12376398403109838No Hit
GTCCGA142270.11847599251853294No Hit
GGCCGC132380.11024004983203341No Hit
GCCCGC127790.10641770636074595No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)