EGAF00004828368 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828368
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12008340
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	36882	0.3071365401046273	No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT	29098	0.24231492446083305	No Hit
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA	22279	0.18552939040700048	No Hit
CACCCGTTTACCTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAA	22202	0.18488816938894134	No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT	19260	0.1603885299716697	No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG	18506	0.1541095605221038	No Hit
CTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAAC	18375	0.1530186520368344	No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT	17659	0.14705612932345355	No Hit
GTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACACGGCC	17172	0.14300061457287186	No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC	16179	0.134731361703616	No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC	16080	0.13390693468039713	No Hit
CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTC	16020	0.13340728193905235	No Hit
CTCGTGCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTG	13618	0.11340451719388357	No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA	13593	0.11319632855165661	No Hit
CCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC	13451	0.11201381706380732	No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA	12430	0.10351139291525722	No Hit
AACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTT	12299	0.10242048442998782	No Hit
CTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCCAAGCAACCCGA	12025	0.10013873691118007	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGTAA	2050	50.650455	1
GCGTAAC	2265	46.68161	2
GTCGGGA	3975	39.301163	1
CGTAACT	2870	37.330414	3
CCCGTAT	5705	34.911724	1
GTATCGA	5915	33.68379	4
AGGAACG	4575	32.867657	7
GAACGGG	4590	32.86262	9
CACGGAA	3055	32.766	94
TATCGAA	6330	31.47545	5
TGTCGAG	1050	31.326982	5
CGTATCG	8550	26.930214	3
GGAACGG	5550	26.839603	8
CCGTATC	8730	26.699242	2
GTAACTA	4130	26.624142	4
TCGCGTA	1090	25.867609	2
ATCGAAG	9665	24.552704	6
ACTAGTT	4780	23.593544	7
GTCGAGG	1480	23.495237	6
CCATACG	995	22.198814	94