FastQCFastQC Report
Wed 8 May 2024
EGAF00004828370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11971532
Total Bases71.8 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1168892197.63930798497636No Hit
NTCCGC491680.4107076688263457No Hit
GTCTGC278480.23261851532452152No Hit
GTCCGT189100.15795806251029526No Hit
TTCCGC169910.14192836806517328No Hit
GTCCTC168630.14085916489217923No Hit
ATCCGC159960.13361698402510222No Hit
GTTCGC159710.13340815528037683No Hit
GACCGC153370.12811225831414058No Hit
GTCCCC151600.12663375080148473No Hit
GTCCAC149410.1248044109976902No Hit
GTCCGA144200.12045241995761277No Hit
GGCCGC124180.10372941408000247No Hit
GCCCGC123680.10331175659055165No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)