FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12005124
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1170157597.47150466750696No Hit
NTCCGC735860.6129549349094604No Hit
GTCTGC277930.23150947878589176No Hit
GTCCGT192970.1607396974825083No Hit
GTCCTC166420.13862414082520097No Hit
TTCCGC165270.1376662165255436No Hit
GTTCGC159880.13317646698193206No Hit
ATCCGC150930.12572131699764202No Hit
GACCGC148950.12407202124692755No Hit
GTCCCC147030.12247270415532568No Hit
GTCCGA145530.12122323767751171No Hit
GTCCAC145290.12102332304106146No Hit
GCCCGC122700.10220635788518304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)