FastQCFastQC Report
Wed 8 May 2024
EGAF00004828379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10634638
Total Bases63.8 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1035951997.41299139660418No Hit
NTCACG432410.4066052836025072No Hit
ATTACG277340.26078931882777767No Hit
ATCATG231470.2176566799923044No Hit
ATCCCG229800.21608633975129196No Hit
ATCACT209840.1973174827389517No Hit
ATCACC207930.19552146485851235No Hit
ATCACA193570.18201841943280062No Hit
ATCAAG130420.12263699055858789No Hit
CTCACG128960.12126411825207403No Hit
ATAACG127230.11963735860120485No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)