FastQCFastQC Report
Wed 8 May 2024
EGAF00004828388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14320335
Total Bases85.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1402905097.96593445614226No Hit
NCTTGA592190.4135308287131551No Hit
ACTTGC452380.3159004311002501No Hit
ATTTGA194330.13570213266658915No Hit
ACTTTA193030.13479433267448004No Hit
ACTTCA185780.12973160194925606No Hit
CCTTGA173410.12109353587049464No Hit
ACTTAA160070.11177811133608256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)