FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14238472
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1392448997.79482657970603No Hit
NCTTGA875690.6150168360762307No Hit
ACTTGC440130.3091132250707801No Hit
ATTTGA193090.13561146167931504No Hit
ACTTTA189940.13339914563866123No Hit
ACTTCA181260.12730298588219296No Hit
CCTTGA170150.11950018232293465No Hit
ACTTAA157570.11066496461137121No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)