FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14238472
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCATTCG35550.029.079093
GCGATTT47250.028.34516394
CATTCGG37950.027.7353734
CGACCTA16050.025.4707644
TCACCCG60000.024.5126823
TAGCATA59450.023.556189
ACCCGGC70300.021.723075
CACCCGG70750.021.4522974
CTCGATT43500.021.39012748-49
CCAGTAG61950.021.2378185
GTCTAAC21350.020.9647941
GTAGCAT68900.020.8023288
GCGGGTC63550.020.3887042
ATTCCGT46650.020.09705752-53
GTTAGTT72000.019.9586961
TGCGAAT41250.019.71670274-75
CTTAGCG21000.019.4684478
GCCAGTA68300.019.401094
ACGCACG36300.019.22476652-53
TAACACG22200.019.0496644
Produced by FastQC (version 0.11.5)