FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16574985
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1618377897.6397746362968No Hit
NAGCTT650800.39263987267560124No Hit
TAGCTA370820.2237226760687868No Hit
TAGCTC352110.21243458138876145No Hit
TAGTTT327120.19735764466755173No Hit
TAGCCT310640.18741495090342464No Hit
TATCTT304760.18386743638078706No Hit
TAACTT249370.15044960825002254No Hit
TAGCAT181140.10928516677390658No Hit
TAGATT176300.10636510379949062No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)