FastQCFastQC Report
Fri 10 May 2024
EGAF00004828397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16533944
Total Bases99.2 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1613899097.61125355208654No Hit
NAGCTT678050.4100957400121834No Hit
TAGCTA369240.22332239664051118No Hit
TAGCTC353790.21397798371640792No Hit
TAGTTT329110.19905111569266232No Hit
TAGCCT311340.1883035287890173No Hit
TATCTT310440.1877591940555744No Hit
TAACTT253980.1536112617775892No Hit
TAGCAT185890.1124293151107806No Hit
TAGATT177990.10765126578389282No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)