FastQCFastQC Report
Fri 10 May 2024
EGAF00004828399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16533944
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT445370.2693670669260764No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG290860.17591688952133866No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA230370.1393315472702702No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC171890.10396188592389087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)