FastQCFastQC Report
Wed 8 May 2024
EGAF00004828400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16486602
Total Bases98.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1606349997.43365552222343No Hit
NAGCTT1010840.6131281630987392No Hit
TAGCTA370550.22475826128392015No Hit
TAGCTC355110.2153930809999538No Hit
TAGTTT325150.197220749309045No Hit
TAGCCT306990.18620574451909494No Hit
TATCTT301890.18311232357037552No Hit
TAACTT244950.14857518850761364No Hit
TAGCAT183240.11114479502810828No Hit
TAGATT173330.10513385353755735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)