FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11089767
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1084719297.8126231146245No Hit
NGCTAC440120.3968703760863506No Hit
GGCTCC271210.24455879009901652No Hit
GTCTAC216920.19560374893358895No Hit
AGCTAC215170.19402571758270487No Hit
GGCTAA168720.1521402568692381No Hit
GGCTAT141300.1274147599313854No Hit
GACTAC131840.11888437331460616No Hit
TGCTAC121830.10985803398754906No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)