FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11070148
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1082391797.77572079433807No Hit
NGCTAC451540.40788975901677194No Hit
GGCTCC273480.2470427676305683No Hit
AGCTAC224270.20258988407381726No Hit
GTCTAC206650.1866732043690834No Hit
GGCTAA167020.15087422498777794No Hit
GGCTAT143210.12936593078972386No Hit
TGCTAC128240.11584307635272807No Hit
GACTAC128150.11576177662665395No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)