FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11076235
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1081282097.62180018751859No Hit
NGCTAC680940.614775688670383No Hit
GGCTCC270220.2439637656658603No Hit
AGCTAC215830.1948586320171069No Hit
GTCTAC201150.1816050309514018No Hit
GGCTAA161450.14576252670695414No Hit
GGCTAT142680.12881633515359686No Hit
TGCTAC124380.1122944755144686No Hit
GACTAC120470.10876439512162751No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)