FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12256643
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1193247397.35514855087155No Hit
NTGGCC753060.6144096715552537No Hit
GTGGCT466140.3803162089325764No Hit
GTTGCC218900.17859702693469984No Hit
GTGTCC214920.17534980826315982No Hit
GTGGTC203160.16575501138443863No Hit
ATGGCC174870.1426736505256782No Hit
TTGGCC166580.13590997143345043No Hit
GTGGCA127980.1044168456240424No Hit
GTAGCC126990.10360912037659904No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)