FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13679132
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1315060596.13625338215904No Hit
GTTTTG1777991.2997827639940898No Hit
NTTTCG526760.3850829131556008No Hit
GTTTCC308120.2252482101934538No Hit
GATTCG268070.19597003669531077No Hit
GTTTCA255190.18655423458155093No Hit
GGTTCG233730.1708661046621964No Hit
GTTTCT230310.1683659460263999No Hit
GTTTAG223510.16339487037627826No Hit
GTTCCG218730.15990049661045744No Hit
GCTTCG209240.1529629219163906No Hit
TTTTCG200120.14629583222093331No Hit
ATTTCG195440.14287456250879077No Hit
GTTTGG146700.10724364674600698No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)