FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13577309
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1305796196.17488266636636No Hit
GTTTTG1755871.2932385938922064No Hit
NTTTCG543190.4000719141031555No Hit
GTTTCC290730.2141293241539984No Hit
GATTCG252640.1860751640844294No Hit
GTTTCA243840.17959376191556073No Hit
GGTTCG227890.16784622048448627No Hit
GTTTCT217130.15992123328709687No Hit
GTTCCG216310.15931728444863413No Hit
GTTTAG208800.1537859969158837No Hit
GCTTCG205520.15137020156203265No Hit
TTTTCG200120.14739297750386327No Hit
ATTTCG196260.14454999882524586No Hit
GTTTGG138870.1022809453625899No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)