FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13146157
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1282298297.54167700872583No Hit
NATCAG515230.3919244232363876No Hit
GATTAG400720.30481911938218903No Hit
GATCCG340520.25902626904577514No Hit
GATCAA236730.18007543953719707No Hit
GAACAG191360.14556345249794295No Hit
GATCAT152020.11563835727810036No Hit
GATAAG151430.11518955691766043No Hit
AATCAG145590.11074719402788205No Hit
GTTCAG144460.10988762723585305No Hit
GCTCAG143590.10922583687384838No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)