FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13092763
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1276650897.50812719973622No Hit
NATCAG534580.40830189930116356No Hit
GATTAG396320.302701576435776No Hit
GATCCG333210.25449937496004477No Hit
GATCAA237070.1810694961789196No Hit
GAACAG196790.15030440862635336No Hit
GATAAG155000.11838601218092774No Hit
GATCAT153260.11705703372160636No Hit
AATCAG149350.11407065109175199No Hit
GCTCAG142930.10916717884529033No Hit
GTTCAG139760.10674599395100942No Hit
TATCAG136440.10421024194816632No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)