FastQCFastQC Report
Tue 10 May 2022
EGAF00004828448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12047426
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1180004897.94663191954862No Hit
NGTACG474690.3940177760793052No Hit
CGTCCG285900.2373121030168602No Hit
CTTACG240300.19946169414113854No Hit
CGTACT177870.14764149620010117No Hit
TGTACG167310.1388761383551972No Hit
AGTACG149390.12400159170929956No Hit
CGTATG125420.10410522546475903No Hit
CGTAAG123450.10247002139710175No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)