FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12047426
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT336870.2796198955693938No Hit
CATGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCC212580.17645262979826562No Hit
CTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC193530.16064012345873716No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG184050.15277122266615292No Hit
CCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGC176720.1466869354499459No Hit
CCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTG173770.14423827961259109No Hit
GTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC141580.11751887913650601No Hit
CAGGAGGCAGCACTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTCC131210.10891123132858421No Hit
GGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCT125930.10452855240613224No Hit
CAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTG125400.10408862440823459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)