FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11993667
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1172153197.73100253658869No Hit
NGTACG739920.6169255824761518No Hit
CGTCCG291070.2426864110867844No Hit
CTTACG223260.18614823973351935No Hit
CGTACT179540.14969566855574695No Hit
TGTACG169130.1410160879070596No Hit
AGTACG150860.12578304867060255No Hit
CGTATG123080.10262082480695853No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)