FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11993667
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT337840.28168199100408575No Hit
CATGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCC212190.1769183686690651No Hit
CTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC198050.16512881339793745No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG184940.15419804468474904No Hit
CCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGC178270.14863677639207426No Hit
CCCAGACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTG175260.14612711858683422No Hit
GTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC145370.12120563293945047No Hit
CAGGAGGCAGCACTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTCC134300.1119757618749962No Hit
GGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCT129180.10770684228601644No Hit
CAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTG126520.10548900515580431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)