FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13573069
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCT1327382697.79531806697513No Hit
NTTCCT557700.4108871766584256No Hit
ATTCTT282040.20779383056256473No Hit
CTTCCT280120.2063792647042463No Hit
ATTCCC263280.19397234332191193No Hit
ATTTCT240360.17708596338823593No Hit
GTTCCT143090.10542199409728191No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)