FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13539099
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCT1321714397.6220278764488No Hit
NTTCCT832970.6152329634342728No Hit
ATTCTT283630.20948956795426343No Hit
CTTCCT275310.20334440275530888No Hit
ATTCCC245800.18154826994026707No Hit
ATTTCT238440.17611216226426885No Hit
GTTCCT141730.10468200284228663No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)