FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15595132
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1528607398.01823415152883No Hit
NCAGTG866910.5558850030894256No Hit
ATAGTG303470.1945927742067204No Hit
ACAGCG199790.12811048986311882No Hit
ACAGTT187610.12030036039451285No Hit
CCAGTG178970.11476017003254604No Hit
ACAGTA169470.10866852553732793No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)