FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15562188
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1526418598.08508289451329No Hit
NCAGTG833410.5355352345055849No Hit
ATAGTG302090.1941179479389402No Hit
ACAGCG197760.12707724646431465No Hit
ACAGTT173220.11130825562575133No Hit
CCAGTG172690.11096768654896086No Hit
ACAGTA159360.10240205297609821No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)