FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15597083
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTG1532289098.24202384509975No Hit
NCAGTG757250.4855074503354249No Hit
ATAGTG301720.1934464284122871No Hit
ACAGCG183480.11763738129751569No Hit
CCAGTG165960.10640451166413617No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)