FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14090174
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1376254197.67474127714817No Hit
NCCAAT779680.5533501573507893No Hit
ACCAAT277420.1968889809309665No Hit
GCTAAT252760.17938742275290567No Hit
GCCACT248960.1766905078673975No Hit
GCCAAA246560.17498719320286604No Hit
GTCAAT227900.1617439216861339No Hit
GCCCAT191350.13580385877420678No Hit
TCCAAT185230.1314604063796515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)