FastQCFastQC Report
Wed 8 May 2024
EGAF00004828487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13996891
Total Bases83.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1368087397.74222718459407No Hit
NCCAAT738190.5273956909430816No Hit
ACCAAT268390.19174972499250012No Hit
GCTAAT255670.18266199258106675No Hit
GCCAAA243240.17378144903750412No Hit
GCCACT241710.172688349148393No Hit
GTCAAT221500.1582494283909191No Hit
GCCCAT185060.13221507547640401No Hit
TCCAAT180000.12859998695424577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)