FastQCFastQC Report
Wed 8 May 2024
EGAF00004828496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14289465
Total Bases85.7 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1400733698.02561537468337No Hit
NTTGTA757280.5299568598264526No Hit
CTTGTC258330.18078353528281152No Hit
TTTGTA164890.11539270364565783No Hit
CTTTTA156740.10968920110025113No Hit
ATTGTA147650.10332787126739874No Hit
CATGTA145150.10157833060929852No Hit
CTTGAA143210.10022068705861276No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)