EGAF00004828498 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828498
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14289465
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT	35624	0.24930254561664833	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	33766	0.23629995944564755	No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT	33490	0.23436846655910493	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	29998	0.20993088264676107	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	24467	0.1712240451269519	No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT	20326	0.14224465366617994	No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	17857	0.12496619012678221	No Hit
CGTGCCTCCTGGTCTCAGTATGGCGCTGTCCTGGGTTCTTACAGTCCTGA	17380	0.121628066551127	No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG	16991	0.11890578128712306	No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC	16381	0.11463690208135854	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC	15908	0.11132677115623293	No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC	14616	0.10228514503517101	No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT	14329	0.10027667235967197	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	1900	54.27716	1
ACCGTTG	2420	42.912994	3
GACCGTT	2445	42.17872	2
ACCCGGC	7875	41.590355	5
CGGCCCG	8160	40.309803	8
TCACCCG	8495	38.555058	3
CCAGTAG	7025	36.45529	5
GCGATTT	8865	34.670216	94
CCTAGAG	10560	33.355255	1
CACCCGG	10145	32.42324	4
CGCAAAA	6110	32.215263	1
TAGAGGC	10930	32.201313	3
CACATGC	10555	30.87269	1
CATTCGG	2995	30.437943	4
AGTAGCA	8700	29.381973	7
CCGTTGA	3645	28.619751	4
ACATGCC	11405	27.993845	2
GTAGCAT	9235	27.730803	8
CCCGGCC	12130	27.582245	6
TAGCATA	9365	27.446304	9