FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14299011
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1403163898.13012941944027No Hit
NTTGTA692100.4840194891800559No Hit
CTTGTC258580.18083768171099385No Hit
TTTGTA163570.11439252686776728No Hit
CTTTTA155860.10900054556220706No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)