FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13730968
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAA1341399697.69155386568522No Hit
NTGAAA760290.5537045895089115No Hit
GTGAAC382140.2783052148981776No Hit
GTGACA328360.2391382748834605No Hit
GTTAAA248320.18084668174887597No Hit
TTGAAA195310.14224051792998132No Hit
ATGAAA186520.1358389299283197No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)