FastQCFastQC Report
Tue 10 May 2022
EGAF00004828505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13626259
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAA1331692697.72987582285057No Hit
NTGAAA723060.5306372057070102No Hit
GTGAAC382270.2805392147617332No Hit
GTGACA318550.23377656332526775No Hit
GTTAAA250050.18350597915392625No Hit
TTGAAA186960.13720567031640893No Hit
ATGAAA179290.13157683264350103No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)