FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13648851
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAA1335898497.87625346631742No Hit
NTGAAA660290.48376965943873224No Hit
GTGAAC373030.27330505696047236No Hit
GTGACA324410.23768301082633259No Hit
GTTAAA246170.18035950425424088No Hit
TTGAAA192460.14100820647833287No Hit
ATGAAA157050.11506463071506898No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)