FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12807739
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1245016897.20816453239716No Hit
ATGTCG987600.7710962879552746No Hit
NTGTCA681010.5317175810656354No Hit
ATGTCC262220.20473558994292435No Hit
ATTTCA236860.18493506152803396No Hit
ATGTTA175240.1368235252139351No Hit
ATGACA144500.11282241151228956No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)