FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12807739
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG202270.15792795277917515No Hit
CACATCTTATCGCATCCACTCCTGTCCACTCCCGTCCACTTTGCCCTCTT195710.15280604952989751No Hit
GTCAAAAGAAAGCTCTTTATTGATTGACTCAGCAATGCAGGGCTGGCACC183800.14350698433189496No Hit
GTCGGGTTGGAGGGGCAGGATGGCCCCCAAGTCTCTGTCCTGATCCAAGG140710.10986326314113679No Hit
CCACATCTTATCGCATCCACTCCTGTCCACTCCCGTCCACTTTGCCCTCT139370.1088170207091197No Hit
CTCCTGTCCACTCCCGTCCACTTTGCCCTCTTCCAGGCTGAAATCTTGCT135740.1059827968074615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)