FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12807739
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC394310.3078685472900408No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT310080.24210362188048962No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC269590.21048992331901828No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG261500.20417342983019876No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC242240.1891356468147891No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG237600.18551283719944636No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA223790.1747302939261957No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT210000.1639633662116319No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT189650.1480745352477904No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC183310.14312440314406782No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT175730.13720610640176226No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT149140.1164452211276323No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA148450.11590648435293692No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC144710.11298637487850119No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC144480.11280679595360274No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA144260.11263502480804768No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG142900.1115731668173438No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT137250.10716177148831657No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG133890.10453835762893045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)