FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12892335
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1255172597.35804258887161No Hit
ATGTCG991670.7691934781403059No Hit
NTGTCA625560.4852185426456883No Hit
ATGTCC260080.20173226960050294No Hit
ATTTCA228010.17685702396036093No Hit
ATGTTA171230.13281535113693524No Hit
ATGACA132920.10310002028336993No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)