FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12892335
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG202210.15684513317409143No Hit
CACATCTTATCGCATCCACTCCTGTCCACTCCCGTCCACTTTGCCCTCTT200060.15517747560856895No Hit
GTCAAAAGAAAGCTCTTTATTGATTGACTCAGCAATGCAGGGCTGGCACC184990.143488359556279No Hit
CCACATCTTATCGCATCCACTCCTGTCCACTCCCGTCCACTTTGCCCTCT142970.11089534983383538No Hit
GTCGGGTTGGAGGGGCAGGATGGCCCCCAAGTCTCTGTCCTGATCCAAGG141970.11011969515219702No Hit
CTCCTGTCCACTCCCGTCCACTTTGCCCTCTTCCAGGCTGAAATCTTGCT139940.10854511614847118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)